计算生物学与药物设计小组
发表于 2015-11-30 14:54
Jie Dong, Ph. D.
Tel: 1354****180 |
Address: Changsha, Hunan, China |
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E-mail: biomed@csu.edu.cn |
Homepage: http://home.scbdd.com |
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Personal page: https://scholar.google.com/citations?user=phFGEecAAAAJ&hl=en https://www.researchgate.net/profile/Jie_Dong7 |
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Education background |
2008.09-2012.06 Central South University(Bachelor) 2012.09-2017.11 Central South University(Ph.D.) 2018.03- Central South University of Foresty and Technology 2019.05- Universidade de Macau Major:Medicinal Chemistry (Cheminformatics and Drug Design) Major Courses: Medicinal Chemistry; Pharmaceutics; Pharmaceutical Analysis; Biopharmaceuticals and Pharmacokinetics; Pharmacotherapeutics; Organic Chemistry; Analytical Chemistry; Pharmacognostics; Microbiology; Biochemistry; Molecular biology. |
Skills certificate |
National College English Test (CET6) National Computer Rank Examination(NCRE,Level II: VB) The Primary Pharmacist License of Ministry of Health Certificate of the GCP Training |
Professional expertise |
● Drug Design: Be skilled with ligand-based drug design (Molecular Operation, Molecular Similarity, Quantitative Structure-Activity Relationship (QSAR) Study, Virtual Screening, et al.) and receptor-based drug design (e.g., Docking). Can use these technologies to solve problems in drug discovery including target screening, activity prediction, ADMET property prediction, Lead compound generation and optimization. ● Artificial Intelligence and Data Mining: Be familiar with commonly used statistical and machine learning algorithms (PLS, RF, SVM, DT, KNN, et al.). Can apply these methods and technologies into drug target discovery, drug design, modeling and prediction in pharmacokinetics, and computational medicine area. Be skilled with mining big data through programming technology and algorithms. Can quickly select bioactive lead compounds in mass data, and achieve rapid diagnosis and evaluation for complex disease systems. ● Interdisciplinary Skills :Can solve specific problems in interdisciplines by means of Cheminformatics and Bioinformatics methods and tools, such as target prediction of natural products, multi-target mechanism research of traditional Chinese medicine, data analysis of radiomics and theoretical calculation of small molecule probes. ● Computer Skills and Application: Be familiar with and master several popular programming languages, such as Python, HTML, CSS, JavaScript, PHP and SQL. Can use these skills to realize kinds of development of content management system, databases, computing/analyzing platforms, scientific packages and tools. |
Research areas |
● Computer aided molecular design based on artificial intelligence system and system pharmacology; ● Software, web services and database development in process of system biology and drug discovery; ● Development of structure-based virtual screening methods; ● Predictions of ADMET and drug-likeness。 |
Research projects |
● Preside over 2016 the Hunan Provincial Innovation Foundation for Postgraduate:Construction of a platform for predicting drug-target interaction based on chemical biological methods; Grants No.: CX2016B058; Amount: 30,000¥. ● Participate in 2011 Innovative training program for college students of Central South University:The design and reevaluation of prodrug: VBE-1 which is a PI3K/Akt/mTOR pathway inhibitor; Grants No.: CL11249; Amount: 3,000¥. ● Participate in the project of NSFC:Multi-scale based system biology method to predict drug side effects interaction networks; Grants No.: 81402853 ● Participate in the project of NSFC: Construction of a novel molecular probe with high affinity selection and its diagnosis and treatment of rheumatoid arthritis; Grants No.: 81671756 ● Participate in the project of NSFC: Construction of an image probe of sulfonyl sulfonyl molecules and its application in cell apoptosis imaging; Grants No.: 81671234 ● Participate in Innovation Drive Program of Central South University:Multi-scale based network pharmacology on drug target network prediction and drug redirection study; Grants No.: 90700-505019119 |
Conferences |
● In November 2017, attend the 14th Fourteenth National Conference on Computing (Computer) Chemistry, Location: Nanjing University, The poster and oral presentation; ● In July 2016, attend The 30th annual conference of the Chinese Chemical Association,Location: Dalian University of Technology, Poster Presentation; ● In October 2016, Conference on Medicinal Chemistry in Central China and Frontier Science Seminar on International Pharmacy, Location: Wuhan University; ● In July 2015, attend the 14th Fourteenth National Conference on Computing (Computer) Chemistry, Location: Sun Yat-sen University, Poster Presentation; |
Publications |
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Awards |
● In 2016, won the Top-notch Doctoral Scholarship (16 places in total); ● In 2016, won the "top ten" PhD of Central South University (10 places in total); ● In 2016, won the Graduate National Scholarship; ● In 2017, won the "Lu Huilin" Award of Central South University; ● In 2015, won the annual best monitor of Central South University; ● In 2015, won the "Lu Huilin" Award of Central South University; ● In 2015, won the annual "Excellent Communists"; ● In 2015-2016, won the Outstanding postgraduate cadres of Central South University; ● In 2014-2015, won the Outstanding postgraduate cadres of Central South University; ● In 2012, won the first prize of "Thanksgiving first" in Central South University; ● In 2012, won the first prize of "Thanksgiving first" in Xiangya School of Medicine; ● In 2009-2010, won the "excellent director" of the League Committee of my University; ● In 2009-2010 won the "excellent cadre" of the League Committee of my University; ● In 2009-2010 won the "single award" of the comprehensive evaluation of my college; ● In 2009 won Lei Feng's spiritual speech winning awards of my University; ● In 2008-2009 won the "third award" of the comprehensive evaluation of my college; ● In 2008-2009 won the "excellent student cadre" of Central South University. |
Representative achievements |
● ChemDes URL: http://www.scbdd.com/chemdes Description: An integrated web-based platform for molecular descriptor and fingerprint computation.
● ChemSAR Description: an online pipelining platform for molecular SAR modeling.
● PyNetSim URL: http://pynetsim.scbdd.com Description: generating various network-based node similarity indices in network inference schemes.
● ChemBCPP URL: http://chembcpp.scbdd.com Description: A freely available web server for calculating commonly used physicochemical properties.
● BioMedR URL: http://bioconductor.org/packages/BioMedR/ Description: an R/Bioconductor package linking the chemical, protein and DNA/RNA space in view of molecular representation.
● BioTriangle URL: http://biotriangle.scbdd.com Description: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
● TargetNet URL: http://targetnet.scbdd.com Description: a web service for predicting potential drug-target interaction profiling via multi-target SAR models.
● ADMETlab Description: a platform for systematic ADME/T property evaluation based on a comprehensive database.
● HAMDB Description: A database providing the up-to-date information of existing autophagy-related modulators (proteins, chemicals and microRNA) including their specific effect on autophagy, pathway and disease information.
● GPCRnet Description: a web server that could be used for netting or predicting the binding of multiple GPCR targets for any given molecule. |
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